woman holds up a petri dish with visible microbes present
Illinois-Indiana Sea Grant funded Maureen Coleman at the University of Chicago to identify microbes throughout the Great Lakes. (Illinois-Indiana Sea Grant Photo/Irene Miles)

Life on Earth is dependent on microbes to create the air we breathe and transform nutrients. This is of course true for Great Lakes ecosystems, but previously, no comprehensive research has looked at what microbial populations are in these waters.

Now, University of Chicago researchers are the first to systematically identify the species and abundance of viruses, bacteria and other microscopic life in all five Laurentian Great Lakes.

Maureen Coleman and members of her lab have been collecting samples aboard Great Lakes research vessels since 2012. In 2015, Illinois-Indiana Sea Grant began supporting their work to build a baseline understanding of microbial communities. Now, the team, which includes Sara Paver, Justin Podowski and María Hernández-Limón, have been awarded a grant from the National Science Foundation to continue their studies.

“The primary pattern we found is that microbes differ with depth,” said Coleman. “When the lakes are stratified in the summer, the surface heats up and the bottom stays cool. At that point, we see very different communities in the surface and the deep water. It’s driven by temperature and light, probably.”

The microbial communities on the surface are different in the upper lakes—Superior, Michigan and Huron—than the lower lakes—Erie and Ontario. “This makes sense because the upper and lower Great Lakes diverge physically and chemically,” said Coleman.  “In addition to temperature, nitrogen, phosphorus and chlorophyll levels are different between the upper and lower lakes. The microbes respond to that.”

Tony Briscoe, environmental reporter with the Chicago Tribune, has more of the story: “Minuscule microbes wield enormous power over the Great Lakes. But many species remain a mystery.”

 

Writer: Irene Miles, 217.333.8055, miles@illinois.edu

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Celebrate Earth Day with freshwater science and good conversation! Join Illinois-Indiana Sea Grant, the Northwestern Center for Water, Loyola University researcher Tim Hoellein, and IISG’s Sarah Zack for Science Sips: Trash Talk about Chicago Waterways. Learn what research reveals about litter and trash in Lake Michigan and Chicago waterways and what we can do to help.Plus, enjoy Great Lakes trivia games!📅 April 22, 2026⏰ 7–9 PM📍 Sketchbook Brewing Company, Evanston Tap RoomCome curious and ready to test your Great Lakes knowledge!
Looking for a fun way to teach about marine debris? Check out Me and Debry, which is a whimsical, 30‑minute, audience‑participation play created for @UWiscSeaGrant. It helps students explore what marine debris is, why it matters, and how we can make a difference in the Great Lakes.The full script (English) and participation scripts (English, Spanish, and Hmong) are free to use, along with marketing materials for performances.Bring learning to life and start a conversation about litter in our waters!Check it out at the link in bio.#TeachingTuesday
Do you work or live along the Great Lakes coasts? Watch our newly released video series collection, containing several short videos that overview the range of coastal protection options in the Great Lakes, including:- Natural processes in the Great Lakes- Hard coastal protection structures and how they interact with/alter natural processes- Nature-based coastal solutions in the Great Lakes, ranging from green to gray approachesFind our two new video series at the link in bio.