woman holds up a petri dish with visible microbes present
Illinois-Indiana Sea Grant funded Maureen Coleman at the University of Chicago to identify microbes throughout the Great Lakes. (Illinois-Indiana Sea Grant Photo/Irene Miles)

Life on Earth is dependent on microbes to create the air we breathe and transform nutrients. This is of course true for Great Lakes ecosystems, but previously, no comprehensive research has looked at what microbial populations are in these waters.

Now, University of Chicago researchers are the first to systematically identify the species and abundance of viruses, bacteria and other microscopic life in all five Laurentian Great Lakes.

Maureen Coleman and members of her lab have been collecting samples aboard Great Lakes research vessels since 2012. In 2015, Illinois-Indiana Sea Grant began supporting their work to build a baseline understanding of microbial communities. Now, the team, which includes Sara Paver, Justin Podowski and María Hernández-Limón, have been awarded a grant from the National Science Foundation to continue their studies.

“The primary pattern we found is that microbes differ with depth,” said Coleman. “When the lakes are stratified in the summer, the surface heats up and the bottom stays cool. At that point, we see very different communities in the surface and the deep water. It’s driven by temperature and light, probably.”

The microbial communities on the surface are different in the upper lakes—Superior, Michigan and Huron—than the lower lakes—Erie and Ontario. “This makes sense because the upper and lower Great Lakes diverge physically and chemically,” said Coleman.  “In addition to temperature, nitrogen, phosphorus and chlorophyll levels are different between the upper and lower lakes. The microbes respond to that.”

Tony Briscoe, environmental reporter with the Chicago Tribune, has more of the story: “Minuscule microbes wield enormous power over the Great Lakes. But many species remain a mystery.”

 

Writer: Irene Miles, 217.333.8055, miles@illinois.edu

IISG Instagram

Celebrate Earth Day with freshwater science and good conversation! Join Illinois-Indiana Sea Grant, the Northwestern Center for Water, Loyola University researcher Tim Hoellein, and IISG’s Sarah Zack for Science Sips: Trash Talk about Chicago Waterways. Learn what research reveals about litter and trash in Lake Michigan and Chicago waterways and what we can do to help.Plus, enjoy Great Lakes trivia games!📅 April 22, 2026⏰ 7–9 PM📍 Sketchbook Brewing Company, Evanston Tap RoomCome curious and ready to test your Great Lakes knowledge!
Find us at Chicago Comic & Entertainment Expo, March 27–29! We’re linking Subnautica with Great Lakes science through fun, hands‑on activities about food webs, invasive species, and aquaponics.Come geek out with us! 🔗 in bio for event info
Coastal protection is not limited to concrete, rocks, and steel. Coastal protection solutions exist on a spectrum, ranging from softer “green” solutions to harder “gray” structures.Nature-based coastal solutions fall between green and gray techniques, providing multiple benefits to people and habitats.Our three-part video series, Nature-Based Coastal Solutions in the Great Lakes, is now available to watch. Learn how nature-based coastal solutions, including nature-driven and hybrid approaches, can protect shorelines while supporting ecosystems and communities.Watch the 3-part video series at the link in bio.(Photo credit: Liz Spitzer, Illinois State Geological Survey, Coastal Research Group)